CONCATENATION - Streptococcus pneumoniae

CONCATENATE YOUR OWN ALLELIC PROFILE and add to the reference set (e.g. is it a pneumococcus)-

This page give you the facility to view a Neighbor-Joining tree to see whether your strain clusters among the pneumococcal reference set (i.e. is very likely to be a pneumococcus) or clusters away from the reference set and is therefore unlikely to be a pneumococcus.

REF: Hanage WP et al.(2005) Using multilocus sequence data to define the pneumococcus

You can either enter your own allelic profile or concatenate your own sequences (must be standard loci lenght)

Enter your profile below -

Click here to view an annotated diagram of the reference set

OR