mlst.net | spneumoniae.mlst.net
 
DATA ANALYSIS
DATABASES
B.burgdorferi
B.cereus
B.henselae
B.pseudomallei
C.albicans
C.glabrata
C.krusei
C.tropicalis
C.jejuni
C.neoformans var grubii
E.coli
E.faecalis
E.faecium
H.influenzae
H.pylori
Leptospira spp.
M.catarrhalis
N.meningitidis
S.agalactiae
S.aureus
S.dysgalactiae
S.enterica
S.epidermidis
S.pneumoniae
S.pyogenes
S.suis
V.vulnificus
SUBMISSIONS
NEWS
LINKS
 
CONCATENATION - Streptococcus pneumoniae

 
organism Specific Help Click for help

CONCATENATE YOUR OWN ALLELIC PROFILE and add to the reference set (e.g. is it a pneumococcus)-

This page give you the facility to view a Neighbor-Joining tree to see whether your strain clusters among the pneumococcal reference set (i.e. is very likely to be a pneumococcus) or clusters away from the reference set and is therefore unlikely to be a pneumococcus.

REF: Hanage WP et al.(2005) Using multilocus sequence data to define the pneumococcus

You can either enter your own allelic profile or concatenate your own sequences (must be standard loci lenght)

Enter your profile below -

Click here to view an annotated diagram of the reference set

aroe gdh_ gki_ recP spi_ xpt_ ddl_
ddl not included - see help file
295 418 415 263 414 563  

OR

CONCATENATE YOUR OWN SEQUENCES (enter only 1 unbroken string ie no line breaks etc..)AND ADD TO REFSERENCE STs

aroe  
 
gdh_
 
gki_
 
recP
 
spi_
 
xpt_
 
 
 




 
Profile Query

 
Locus Query